PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g031830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 195aa    MW: 21857.5 Da    PI: 8.8471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g031830.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.6e-11249454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   ++e+Ik+L
  Sopen01g031830.1  2 SHIAVERNRRRQMNENLKVLRSLTPCF---YIKRGDQASIIAGVIEFIKEL 49
                      89************************9...9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.32E-10154No hitNo description
SuperFamilySSF474591.96E-14175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.113149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-11261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-8249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-7455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNENLKV LRSLTPCFYI KRGDQASIIA GVIEFIKELH LVLQSLEAKK  60
RRKSLSPSPG PTTPRPLQLS PTPESSPFIT HNNNFKELGA CCNSPVADVE ARICGSNVML  120
RTISKRIPGQ IVKIINVLEK LSFEILHLNI STMQDTVLYS FVIKIGLECQ LSVEEVALEV  180
QKSFTSSDVL CINEI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15862KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084976.11e-141PREDICTED: transcription factor MUTE
SwissprotQ9M8K61e-87MUTE_ARATH; Transcription factor MUTE
TrEMBLK4AXQ01e-140K4AXQ0_SOLLC; Uncharacterized protein
STRINGSolyc01g080050.2.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA113021821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.19e-89bHLH family protein